Launcher
Configuration Files
cec3_submitit_local.yaml
1# Submitit configuration for running data preparation stage locally
2
3defaults:
4 - submitit_local
5
6cpus_per_task: 1
7tasks_per_node: 2
8mem_gb: 4
9nodes: 1
cec3_submitit_slurm.yaml
1# Submitit configuration for running data preparation stage on slurm cluster
2# (Example configuration. Edit to fit your HPC set-up.)
3
4defaults:
5 - submitit_slurm
6
7mem_per_cpu: 4GB
8tasks_per_node: 1
9timeout_min: 180
10additional_parameters:
11 account: clarity
12 partition: clarity
13setup:
14 [
15 "module load Anaconda3/5.3.0 libsndfile/1.0.28-GCCcore-9.3.0",
16 "source activate clarity",
17 "export SLURM_EXPORT_ENV=ALL",
18 ]